The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

NuclePhaser

napari-nuclephaser

A Napari plugin to detect and count nuclei on phase contrast images

Workflow step:
Image annotation
Image segmentation

License MIT PyPI Python Version tests codecov napari hub npe2 Copier

A Napari plugin to detect and count nuclei on phase contrast images


This napari plugin was generated with copier using the napari-plugin-template.

Installation

You can install napari-nuclephaser via pip:

pip install napari-nuclephaser

To install latest development version :

pip install git+https://github.com/nikvo1/napari-nuclephaser.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-nuclephaser" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.0.1

Last updated:

  • 02 April 2025

First released:

  • 02 April 2025

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 0
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • setuptools
  • wheel
  • napari
  • ultralytics
  • yolov5
  • magicgui
  • sahi
  • scikit-image
  • torch
  • pathlib
  • numpy
  • typing
  • pandas
  • openpyxl
  • seaborn
  • opencv-python
  • imagecodecs