harpy
single-cell spatial proteomics analysis that makes you happy
Note: This package is still under very active development.
Installation¶
Check out the docs for installation instructions.
Tutorials¶
Tutorials are available here.
Usage¶
Learn how Harpy can be integrated into your workflow in different ways.
Contributing¶
See here for info on how to contribute to Harpy.
References¶
License¶
Check license under license. Harpy is free for academic usage. For commercial usage, please contact Saeyslab.
Issues¶
If you encounter any problems, please file an issue along with a detailed description.
Supported data:
- Information not submitted
Plugin type:
GitHub activity:
- Stars: 11
- Forks: 2
- Issues + PRs: 12
GitHub activity:
- Stars: 11
- Forks: 2
- Issues + PRs: 12
Requirements:
- spatialdata>=0.2.6
- xarray>=v2024.10.0
- ome-zarr>=0.9.0
- scanpy>=1.9.1
- voronoi-diagram-for-polygons>=0.1.6
- rasterio>=1.3.2
- seaborn>=0.12.2
- leidenalg>=0.9.1
- geopandas>=1.0.1
- omegaconf==2.3.0
- nptyping
- magicgui
- pyrootutils
- universal_pathlib
- datasets
- crick
- spatialdata_io>=0.1.6