The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

harpy

harpy-analysis

single-cell spatial proteomics analysis that makes you happy

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Note: This package is still under very active development.

Installation

Check out the docs for installation instructions.

Tutorials

Tutorials are available here.

Usage

Learn how Harpy can be integrated into your workflow in different ways.

Contributing

See here for info on how to contribute to Harpy.

References

License

Check license under license. Harpy is free for academic usage. For commercial usage, please contact Saeyslab.

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.0.2

Last updated:

  • 09 December 2024

First released:

  • 09 December 2024

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 11
  • Forks: 2
  • Issues + PRs: 12

Python versions supported:

Operating system:

Requirements:

  • spatialdata>=0.2.6
  • xarray>=v2024.10.0
  • ome-zarr>=0.9.0
  • scanpy>=1.9.1
  • voronoi-diagram-for-polygons>=0.1.6
  • rasterio>=1.3.2
  • seaborn>=0.12.2
  • leidenalg>=0.9.1
  • geopandas>=1.0.1
  • omegaconf==2.3.0
  • nptyping
  • magicgui
  • pyrootutils
  • universal_pathlib
  • datasets
  • crick
  • spatialdata_io>=0.1.6