The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 514

napari-UniSPAC

napari-UniSPAC

A Unified Segmentation framework for Proofreading and Annotation in Connectomics (UniSPAC)!

    • First released:

      07 February 2025
    • Last updated:

      11 July 2025
    • Installs:

      83
    • Plugin type:

      Widget

    PartSeg

    PartSeg

    PartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analysis,

      • First released:

        14 January 2019
      • Last updated:

        10 July 2025
      • Installs:

        8.4K
      • Plugin type:

        Reader, Widget, Writer

      Label Manager

      napari-label-manager

      A plugin for management of label colormap generation and opacity control

      • JH Wang
      • First released:

        10 July 2025
      • Last updated:

        10 July 2025
      • Installs:

        0
      • Plugin type:

        Widget

      seu-3d

      seu-3d

      3d spatial visualization napari plugin

        • First released:

          26 May 2025
        • Last updated:

          10 July 2025
        • Installs:

          199
        • Plugin type:

          Widget

        MolTrack

        napari-moltrack

        A user-friendly SMLM analysis platfrom for napari, which includes single molecule localisation, tracking, and analysis features.

        • Piers Turner
        • First released:

          30 May 2024
        • Last updated:

          09 July 2025
        • Installs:

          1.4K
        • Plugin type:

          Widget
        Workflow step:
        Image segmentation
        Image annotation

        napari NanoPyx

        napari-nanopyx

        napari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

        • Ricardo Henriques
        • Bruno Saraiva
        • Inês Cunha
        • António Brito
        • First released:

          10 May 2023
        • Last updated:

          09 July 2025
        • Installs:

          730
        • Plugin type:

          Widget

        Napari Phasors

        napari-phasors

        A simple plugin to use phasor analysis

        • Bruno Pannunzio
        • Marcelo L. Zoccoler
        • Bruno Schuty
        • Leonel Malacrida
        • First released:

          22 November 2024
        • Last updated:

          08 July 2025
        • Installs:

          154
        • Plugin type:

          Reader, Sample data, Widget, Writer
        Workflow step:
        Image annotation
        Image segmentation

        Laber Manager

        napari-laber-manager

        A plugin for management of label colormap generation and opacity control

        • JH Wang
        • First released:

          07 July 2025
        • Last updated:

          08 July 2025
        • Installs:

          88
        • Plugin type:

          Widget

        napari 3D registration

        napari-3D-registration

        A plugin to help registering fluorescent movies in space and time

        • Leo Guignard
        • First released:

          08 July 2025
        • Last updated:

          08 July 2025
        • Installs:

          4
        • Plugin type:

          Widget

        movement

        movement

        Analysis of body movement

          • First released:

            02 April 2020
          • Last updated:

            08 July 2025
          • Installs:

            6K
          • Plugin type:

            Widget

          ndev Sampledata

          ndev-sampledata

          Sample data for the ndev kit

          • Tim Monko
          • First released:

            05 July 2025
          • Last updated:

            07 July 2025
          • Installs:

            24
          • Plugin type:

            Sample data

          3D Counter

          napari-3d-counter

          A simple plugin for counting objects in 3D images

          • Peter Newstein
          • First released:

            18 October 2023
          • Last updated:

            07 July 2025
          • Installs:

            698
          • Plugin type:

            Widget

          molSEEQ

          napari-molseeq

          A Napari plugin for extracting single molecule sequences from single/multi-channel SMLM microscopy data.

          • Piers Turner
          • First released:

            25 July 2024
          • Last updated:

            06 July 2025
          • Installs:

            101
          • Plugin type:

            Widget
          Workflow step:
          Image annotation
          Image segmentation

          Bioio Reader

          napari-bioio-reader

          A simple plugin to use the Bioio reader in napari

          • Laurent Guerard
          • First released:

            04 July 2025
          • Last updated:

            04 July 2025
          • Installs:

            10
          • Plugin type:

            Reader

          psf-analysis-CFIM

          psf-analysis-CFIM

          A continuation of napari_psf_analysis, developed for CFIM - KU

          • Markus L. Bille
          • First released:

            11 February 2025
          • Last updated:

            04 July 2025
          • Installs:

            145
          • Plugin type:

            Reader, Widget