The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 512

ndev Sampledata

ndev-sampledata

Sample data for the ndev kit

  • Tim Monko
  • First released:

    05 July 2025
  • Last updated:

    05 July 2025
  • Installs:

    0
  • Plugin type:

    Sample data

seu-3d

seu-3d

3d spatial visualization napari plugin

    • First released:

      26 May 2025
    • Last updated:

      05 July 2025
    • Installs:

      165
    • Plugin type:

      Widget

    Bioio Reader

    napari-bioio-reader

    A simple plugin to use the Bioio reader in napari

    • Laurent Guerard
    • First released:

      04 July 2025
    • Last updated:

      04 July 2025
    • Installs:

      2
    • Plugin type:

      Reader

    psf-analysis-CFIM

    psf-analysis-CFIM

    A continuation of napari_psf_analysis, developed for CFIM - KU

    • Markus L. Bille
    • First released:

      11 February 2025
    • Last updated:

      04 July 2025
    • Installs:

      145
    • Plugin type:

      Reader, Widget

    molSEEQ

    napari-molseeq

    A Napari plugin for extracting single molecule sequences from single/multi-channel SMLM microscopy data.

    • Piers Turner
    • First released:

      25 July 2024
    • Last updated:

      03 July 2025
    • Installs:

      95
    • Plugin type:

      Widget
    Workflow step:
    Image annotation
    Image segmentation

    AxonDeepSeg

    AxonDeepSeg

    Axon/Myelin segmentation using AI

      • First released:

        09 December 2017
      • Last updated:

        03 July 2025
      • Installs:

        2.8K
      • Plugin type:

        Widget
      Workflow step:
      Image segmentation
      Image annotation

      ebi_oct

      ebi-oct

      A package for analyzing optical coherence tomography (OCT) images for biofilm.

        • First released:

          03 July 2025
        • Last updated:

          03 July 2025
        • Installs:

          4
        • Plugin type:

          Widget

        TARDIS-em napari plugin

        napari-tardis-em

        Tomogram and micrograph segmentation with TARDIS-em

        • Robert Kiewisz
        • First released:

          22 July 2024
        • Last updated:

          02 July 2025
        • Installs:

          392
        • Plugin type:

          Reader, Widget

        napari NanoPyx

        napari-nanopyx

        napari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

        • Ricardo Henriques
        • Bruno Saraiva
        • Inês Cunha
        • António Brito
        • First released:

          10 May 2023
        • Last updated:

          02 July 2025
        • Installs:

          721
        • Plugin type:

          Widget

        Leonardo-DeStripe

        LSFM-destripe-napari

        A simple plugin to destripe microscopy images in napari

        • lennart kowitz
        • First released:

          12 December 2024
        • Last updated:

          02 July 2025
        • Installs:

          150
        • Plugin type:

          Reader, Widget, Writer
        Workflow step:
        Visualization

        Leonardo-Fuse

        LSFM-fusion-napari

        A simple plugin to fuse microscopy images in napari

        • lennart kowitz
        • First released:

          13 December 2024
        • Last updated:

          02 July 2025
        • Installs:

          161
        • Plugin type:

          Widget, Writer
        Workflow step:
        Visualization

        Segment Anything V2

        napari-SAMV2

        Napari plugin for segment anything version 2 model from meta. Plugin primarily useful for segmenting 3d volumetric data or 3d time series data.

        • Krishnan Venkataraman
        • First released:

          08 October 2024
        • Last updated:

          01 July 2025
        • Installs:

          734
        • Plugin type:

          Widget
        Workflow step:
        Image segmentation
        Image annotation

        3D Counter

        napari-3d-counter

        A simple plugin for counting objects in 3D images

        • Peter Newstein
        • First released:

          18 October 2023
        • Last updated:

          01 July 2025
        • Installs:

          690
        • Plugin type:

          Widget

        Microscopy Array Section Setup

        napari-mass

        Microscopy Array Section Setup napari plugin

        • Joost de Folter
        • First released:

          30 June 2025
        • Last updated:

          30 June 2025
        • Installs:

          10
        • Plugin type:

          Reader, Widget
        Workflow step:
        Image annotation
        Image segmentation

        NIfTI Viewer

        napari-nifti-viewer

        A comprehensive napari plugin for NIfTI file analysis and visualization

        • Yohanchiu
        • First released:

          28 June 2025
        • Last updated:

          28 June 2025
        • Installs:

          23
        • Plugin type:

          Widget