The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.
Bacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.
A Napari plugin for extracting single molecule sequences from single/multi-channel SMLM microscopy data.
File IO with itk for napari
Drag and drop/write tracks from/to the Cell Tracking Challenge (CTC) format.
A framework to annotate single neurons at whole-brain scale
napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis
Control napari with a MIDI controller.
A plugin that enables organelle segmentation, forked from tools from Allen Institute for Cell Science
Plugin to enhance fish detection and analysis for underwater research
Import Trackmate XML files for Track Visualization and analysis in Napari.
A plugin to leverage ML segmentation in napari
A napari plugin for segmentation using vision transformer features
A user-friendly SMLM analysis platfrom for napari, which includes single molecule localisation, tracking, and analysis features.
A plugin to segment cochlear ribbon synapses automatically, as well as edit and adjust
Napari plugin for Spotiflow