De Palma lab

• TODO

Installation¶

First, install Miniconda by following the instructions: https://docs.conda.io/en/latest/miniconda.html.

Then, start an Anaconda Prompt (on Windows, you can find it in the start menu).

Set up a conda environment with Python 3.9:

conda create -n project-env python=3.9

Activate the environment:

conda activate project-env

On Windows, the zeroc-ice dependency fails to install from pip. As a workaround, install it with conda:

conda install -c conda-forge zeroc-ice

Install Napari and the depalma plugin from the GitLab repository in the project-env environment:

pip install git+https://gitlab.com/epfl-center-for-imaging/depalma.git

Start the Napari app with the depalma plugin:

napari -w depalma

Update the project¶

To update the project to the latest version, force the reinstallation of the depalma plugin in your environment:

pip install --force-reinstall git+https://gitlab.com/epfl-center-for-imaging/depalma.git

Build with PyApp¶

python pyapp/build.py

Related projects¶

• JupyterHub (De Palma)